PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G12760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 575aa    MW: 61257.1 Da    PI: 7.7358
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G12760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.91.3e-13197286798
           DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      w+ +De+ +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  OBART02G12760.1 197 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 286
                      **************999999954..699***********98865538***********************9965.567889**********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-19197285IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEFEPETQQS PEINPPQRPK AHAENPAARI RIRISPASSP PPPQNPSGDR GAASSDEEEE  60
EEDSDTDTYA QGFQLRKVGG GDEEGEEVEG DSSESEPEPE PVKKESAKKA KAEAKKKRAA  120
PEPAPSGKAK KAKPEKSSSA AAPEPAPSSG KSKKAAKAEA AKAAAAEPAP STGKVSKSKL  180
APEPSPSSKS GKALSRWTTD DEVKILEVLV AHFKSHGTQL NVEGIIAAVG DSLERKSIKY  240
SDMYEKVRRL KQRYEATAKK VEHGGDLPAK EDDLRMYQLS SEIWGKNAKD AGNSSKNKKG  300
QAKKDKVSGD SKEAAKEDKV DEAAIAVNEK GGTLAENKKG KTNKQKTGME TKVGLSKEAA  360
LAASPTKGKK KGSHKDKLDE EAKSGTAKVT STTATDDDDD DDGTLGGSKR EKAGKEELDG  420
DTHIVMPKEA TTTAARDDGT LVGSKKGKAD NGKLDGDTHS VMPKEATAGT QNGGILTGGE  480
NHKEKVDKDA NVPSIRREYA ELQSLYPNLA SFVNGIEAQH PCGSTFKRAF EFISDDKACT  540
LESKIKKQKI AEVRMQLRLA DTKKEVANAL LGLLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041680.0AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0PREDICTED: neurofilament medium polypeptide
TrEMBLA0A0D3F3T10.0A0A0D3F3T1_9ORYZ; Uncharacterized protein
STRINGORGLA02G0113900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737